PUBLICATIONS

26. Picard, C.L. and Gehring, M. (2017) Proximal methylation features associated with nonrandom changes in gene body methylation. Genome Biology 18: 73.

25. Satyaki, P.R. and Gehring, M. (2017) DNA methylation and imprinting in plants: machinery and mechanisms. Crit Rev Biochem Mol Biol 25: 1-13.

24. Gehring, M. and Satyaki, P.R. (2017) Endosperm and imprinting, inextricably linked. Plant Physiology: 173: 143-154.

23. Gehring, M. Prodigious plant methylomes. Genome Biol 17: 197. Commentary.

22. Klosinska, M.*, Picard, C.L.*, Gehring, M. (2016) Conserved imprinting associated with unique epigenetic signatures in the Arabidopsis genus. Nature Plants 2: 16145. *equal contribution.

21. Gehring, M. (2016) Epigenetics: Cell-type methylomes in the root . Nature Plants 2: 16061. Commentary.

20. Williams, B.P., Pignatta, D., Henikoff, S., Gehring, M. (2015) Methylation-sensitive expression of a DNA demethylase gene serves as an epigenetic rheostat. PLoS Genetics 11: e1005142.

19. Pignatta, D., Bell, G.W., Gehring, M. (2015) Whole genome bisulfite sequencing and DNA methylation analysis from plant tissue. Bio-protocol 5(4).

18. Erdmann, R.M., Souza, A.L., Clish, C.B., Gehring, M. (2014) 5-hydroxymethylcytosine is not present in appreciable quantities in Arabidopsis DNA. G3 5:1-8.

17. Pignatta, D., Erdmann, R.M., Scheer, E., Picard, C.L., Bell, G.W., Gehring, M. (2014) Natural epigenetic polymorphisms lead to intraspecific variation in Arabidopsis gene imprinting. eLife 3: 03198.

16. Waters, A.J., Bilinkski, P., Eichten, S.R., Vaughn, M.W., Ross-Ibarra, J., Gehring, M., Springer, N.M. (2013) Comprehensive analysis of imprinted genes in maize reveals allelic variation for imprinting and limited conservation with other species. Proc Natl Acad Sci USA 110: 19639-19644.

15. Gehring, M. (2013) Genomic imprinting: insights from plants. Annu Rev Genet 47: 187-208.

14. Gehring, M. (2013) Imprinted gene expression and the contribution of transposable elements. In Plant Transposons and Genome Dynamics in Evolution. N. Fedoroff, ed.

13. Pignatta, D. and Gehring, M. (2012) Imprinting meets genomics: new insights and new challenges. Curr Opin Plant Biol 15:530-535.

12. Waters AJ, Makarevitch I, Eichten SR, Swanson-Wagner RA, Yeh CT, Xu W, Schnable PS, Vaughn MW, Gehring M, Springer NM. (2011) Parent-of-origin effects on gene expression and DNA methylation in the maize endosperm. Plant Cell 23: 4221-4233.

11. Gehring, M.*, Missirian, V., Henikoff, S. (2011) Genomic analysis of parent-of-origin allelic expression in Arabidopsis thaliana seeds. PLoS One 6:e23687
* corresponding author

10. Gehring, M., Bubb, K.L., and Henikoff, S. (2009) Extensive demethylation of repetitive elements during seed development underlies gene imprinting. Science 324: 1447-1451.

9. Gehring, M., Reik, W., and Henikoff, S. (2009) DNA demethylation by DNA repair. Trends Genet. 25: 82-90. Cover article.

8. Gehring, M. and Henikoff, S. (2008) DNA methylation and demethylation in Arabidopsis. The Arabidopsis Book. American Society of Plant Biologists, Rockville, MD, doi: 10.1199/tab.0102.

7. Gehring, M. and Henikoff, S. (2007) DNA methylation dynamics in plant genomes. Biochim Biophys Acta. 1769: 276-286.

6. Zilberman, D., Gehring, M., Tran, R.K., Ballinger, T., and Henikoff, S. (2007) Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription. Nat Genet. 39: 61-69.

5. Gehring, M. *, Huh, J.H.*, Hsieh, T.-F., Penterman, J., Choi, Y., Harada, J.J., Goldberg, R.B., and Fischer, R.L. (2006) DEMETER DNA glycosylase establishes MEDEA Polycomb gene self-imprinting by allele-specific demethylation. Cell 124: 495-506. *Equal contribution. Cover article.

4. Gehring, M., Choi, Y. and Fischer, R.L. (2004) Imprinting and Seed Development. Plant Cell 16 (suppl): S203-S213.

3. Xiao, W., Gehring, M., Choi, Y., Margossian, L., Pu, H., Harada, J.J., Goldberg, R.B., Pennell, R.I., and Fischer, R.L. (2003) Imprinting of the MEA Polycomb gene is controlled by antagonism between MET1 methyltransferase and DME glycosylase. Dev. Cell 5: 891-901.

2. Choi, Y., Gehring, M., Johnson, L., Hannon, M., Harada, J.J., Goldberg, R.B., Jacobsen, S.E., and Fischer, R.L. (2002) DEMETER, a DNA glycosylase domain protein, is required for endosperm gene imprinting and seed viability in Arabidopsis. Cell 110: 33-42.

1. Laskowski, M.J., Dreher, K.A., Gehring, M.A., Abel, S., Gensler, A.L., Sussex, I.M. (2002) FQR1, a novel primary auxin-response gene, encodes a flavin mononucleotide-binding quinone reductase. Plant Physiol. 128: 578-590.